0.70521800000000001152
OMAT3P016060
with_AGI_gene
<html><body><title>OMAT3P016060</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300160600000i/OMAT3P016060.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300160600000i/OMAT3P016060.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300160600000i/OMAT3P016060.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401015700000i">OMAT4P101570</a></td><td>0.968269</td><td>-</td><td>AT4G06746</td><td>RAP2.9 (related to AP2 9)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400126500000i">OMAT4P012650</a></td><td>0.964374</td><td>-</td><td>-</td><td>-</td><td>AT4G36850</td><td>INVOLVED IN: biological_process unknown</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300026900000i">OMAT3P002690</a></td><td>0.962055</td><td>-</td><td>AT3G07565</td><td>DNA binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101104300000i">OMAT1P110430</a></td><td>0.961578</td><td>-</td><td>AT1G33102</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401118100000i">OMAT4P111810</a></td><td>0.960782</td><td>-</td><td>AT4G38810</td><td>calcium-binding EF hand family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501064600000i">OMAT5P106460</a></td><td>0.958354</td><td>-</td><td>AT5G22290</td><td>anac089 (Arabidopsis NAC domain containing protein 89)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401010100000i">OMAT4P101010</a></td><td>0.957315</td><td>-</td><td>AT4G02890</td><td>UBQ14</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501171800000i">OMAT5P117180</a></td><td>0.956378</td><td>-</td><td>AT5G63350</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501165000000i">OMAT5P116500</a></td><td>0.955506</td><td>-</td><td>AT5G61390</td><td>exonuclease family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100195200000i">OMAT1P019520</a></td><td>0.955221</td><td>-</td><td>AT1G69010</td><td>BIM2 (BES1-interacting Myc-like protein 2)</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500172000000i">OMAT5P017200</a></td><td>-0.827715</td><td>-</td><td>AT5G57460</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300124800000i">OMAT3P012480</a></td><td>-0.824365</td><td>-</td><td>AT3G48140</td><td>senescence-associated protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101081200000i">OMAT1P108120</a></td><td>-0.810698</td><td>-</td><td>AT1G25570</td><td>leucine-rich repeat protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401101510000i">OMAT4P110151</a></td><td>-0.808507</td><td>-</td><td>AT4G34720</td><td>AVA-P1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100108900000i">OMAT1P010890</a></td><td>-0.801026</td><td>-</td><td>AT1G30890</td><td>integral membrane HRF1 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401100800000i">OMAT4P110080</a></td><td>-0.790207</td><td>-</td><td>AT4G34490</td><td>ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500202700000i">OMAT5P020270</a></td><td>-0.789183</td><td>-</td><td>AT5G65620</td><td>peptidase M3 family protein / thimet oligopeptidase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500061900000i">OMAT5P006190</a></td><td>-0.788913</td><td>-</td><td>AT5G17920</td><td>ATMS1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300030300000i">OMAT3P003030</a></td><td>-0.783718</td><td>-</td><td>AT3G08930</td><td>LOCATED IN: endomembrane system</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201113400000i">OMAT2P111340</a></td><td>-0.783105</td><td>-</td><td>AT2G44090</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300160600000i/OMAT3P016060-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>13/201</td><td>2.48</td><td>8.81e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010556</td><td>regulation of macromolecule biosynthetic process</td><td>20/201</td><td>2.02</td><td>9.88e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0019219</td><td>regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>20/201</td><td>1.98</td><td>1.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0031326</td><td>regulation of cellular biosynthetic process</td><td>20/201</td><td>1.98</td><td>1.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009889</td><td>regulation of biosynthetic process</td><td>20/201</td><td>1.98</td><td>1.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>13/201</td><td>2.36</td><td>1.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0051171</td><td>regulation of nitrogen compound metabolic process</td><td>20/201</td><td>1.96</td><td>1.39e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009628</td><td>response to abiotic stimulus</td><td>16/201</td><td>2.15</td><td>1.40e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006350</td><td>transcription</td><td>20/201</td><td>1.95</td><td>1.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0080090</td><td>regulation of primary metabolic process</td><td>20/201</td><td>1.89</td><td>2.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010468</td><td>regulation of gene expression</td><td>20/201</td><td>1.87</td><td>2.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>21/201</td><td>1.83</td><td>2.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0031323</td><td>regulation of cellular metabolic process</td><td>20/201</td><td>1.84</td><td>3.04e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0060255</td><td>regulation of macromolecule metabolic process</td><td>20/201</td><td>1.82</td><td>3.50e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0019222</td><td>regulation of metabolic process</td><td>20/201</td><td>1.69</td><td>7.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003700</td><td>transcription factor activity</td><td>21/201</td><td>2.07</td><td>5.61e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0003677</td><td>DNA binding</td><td>23/201</td><td>1.65</td><td>6.50e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>61/201</td><td>1.87</td><td>1.82e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>61/201</td><td>1.87</td><td>1.82e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>135/201</td><td>1.24</td><td>7.40e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>131/201</td><td>1.25</td><td>8.45e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>130/201</td><td>1.24</td><td>1.06e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>109/201</td><td>1.29</td><td>1.66e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>109/201</td><td>1.29</td><td>2.20e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>127/201</td><td>1.23</td><td>2.50e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>114/201</td><td>1.26</td><td>3.27e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>104/201</td><td>1.23</td><td>2.08e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>117/201</td><td>1.19</td><td>3.29e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>117/201</td><td>1.18</td><td>4.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>117/201</td><td>1.18</td><td>4.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>115/201</td><td>1.18</td><td>4.59e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>112/201</td><td>1.18</td><td>6.04e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>112/201</td><td>1.18</td><td>6.04e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>41/201</td><td>1.40</td><td>9.30e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>130/201</td><td>1.23</td><td>1.56e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>127/201</td><td>1.24</td><td>1.75e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>123/201</td><td>1.24</td><td>2.83e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>44/201</td><td>1.50</td><td>2.10e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>117/201</td><td>1.20</td><td>2.26e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>104/201</td><td>1.22</td><td>2.93e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>102/201</td><td>1.21</td><td>5.26e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>102/201</td><td>1.21</td><td>5.30e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>100/201</td><td>1.21</td><td>5.71e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>shock</td><td>-</td><td>11/201</td><td>5.83</td><td>5.05e-07</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G57340&keyword=shock">0</a></td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>81/201</td><td>1.60</td><td>9.26e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>78/201</td><td>1.59</td><td>1.86e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>87/201</td><td>1.45</td><td>2.01e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>light</td><td>-</td><td>10/201</td><td>3.73</td><td>9.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>29/201</td><td>1.91</td><td>2.70e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>28/201</td><td>1.91</td><td>3.35e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>28/201</td><td>1.90</td><td>3.78e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>regulation</td><td>-</td><td>25/201</td><td>1.88</td><td>8.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>10/201</td><td>2.69</td><td>1.40e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>21/201</td><td>1.91</td><td>1.61e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G57340&keyword=member">5.00E-12</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>32/201</td><td>1.64</td><td>1.83e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stress</td><td>-</td><td>11/201</td><td>2.33</td><td>2.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transcription</td><td>-</td><td>25/201</td><td>1.71</td><td>3.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>11/201</td><td>2.21</td><td>4.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>22/201</td><td>1.67</td><td>6.84e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>22/201</td><td>1.63</td><td>8.51e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>